Theoretical neuroscience and biophysics

Publications

Theoretical neuroscience and biophysics

1 Curvature in Biological Systems: Its Quantification, Emergence, and Implications across the Scales
Barbara Schamberger, Ricardo Ziege, Karine Anselme, Martine Ben Amar, Michał Bykowski, André P G Castro, Amaia Cipitria, Rhoslyn A Coles, Rumiana Dimova, Michaela Eder, Sebastian Ehrig, Luis M Escudero, Myfanwy E Evans, Paulo R Fernandes, Peter Fratzl, Liesbet Geris, Notburga Gierlinger, Edouard Hannezo, Aleš Iglič, Jacob J K Kirkensgaard, Philip Kollmannsberger, Łucja Kowalewska, Ioannis Papantoniou, Laurent Pieuchot, Tiago H V Pires, Lars D Renner, Andrew O Sageman‐furnas, Gerd E Schröder‐turk, Anupam Sengupta, Vikas R Sharma, Antonio Tagua, Caterina Tomba, Xavier Trepat, Sarah L Waters, Edwina F Yeo, Andreas Roschger, Cécile M Bidan, John W C Dunlop
Advanced Materials

2 Sticky issues in turbulent transport
Antonio Celani, Gautam Reddy, Massimo Vergassola
Annales Henri Poincaré

3 Manipulating the nature of embryonic mitotic waves
Luke Hayden, Woonyung Hur, Massimo Vergassola, Stefano Di Talia
Current Biology - CB

4 Affinity maturation for an optimal balance between long-term immune coverage and short-term resource constraints
Victor Chardès, Massimo Vergassola, Aleksandra Walczak, Thierry Mora
Proceedings of the National Academy of Sciences of the United States of America

5 Confidence-controlled Hebbian learning efficiently extracts category membership from stimuli encoded in view of a categorization task
Kevin Berlemont, Jean-Pierre Nadal
Neural Computation

6 Machine learning and computational modeling approaches towards detection of pathological activity markers in the cortex
Ivan Lazarevich
-THESE-

7 Geometry of Gene Regulatory Dynamics
David A Rand, Archishman Raju, Meritxell Sáez, Francis Corson, Eric D Siggia
Proceedings of the National Academy of Sciences of the United States of America

8 Origin of gradients in lipid density and surface tension between connected lipid droplet and bilayer
Abdou Rachid Thiam, Aymeric Chorlay, Lionel Forêt
Biophysical Journal

9 Biases and Variability from Costly Bayesian Inference
Arthur Prat-Carrabin, Florent Meyniel, Misha Tsodyks, Rava Azeredo da Silveira
Entropy

10 Reciprocal stabilization of glycine receptors and gephyrin scaffold proteins at inhibitory synapses
Thomas Chapdelaine, Vincent Hakim, Antoine Triller, Jonas Ranft, Christian G Specht
Biophysical Journal

11 Fat inclusions strongly alter membrane mechanics
Alexandre Santinho, Aymeric Chorlay, Lionel Foret, Abdou Rachid Thiam
Biophysical Journal

12 Categorical Perception: A Groundwork for Deep Learning
Laurent Bonnasse-Gahot, Jean-Pierre Nadal
Neural Computation

13 Nonlinear neural network dynamics accounts for human confidence in a sequence of perceptual decisions
Kevin Berlemont, Jean-Rémy Martin, Jérôme Sackur, Jean-Pierre Nadal
Scientific Reports

14 Synchronization, stochasticity and phase waves in neuronal networks with spatially-structured connectivity
Anirudh Kulkarni, Jonas Ranft, Vincent Hakim
Frontiers in Computational Neuroscience

15 From neural coding to decision-making
Kevin Berlemont
-THESE-

16 Cholinergic switch between two types of slow waves in cerebral cortex
Trang-Anh E. Nghiem, Núria Tort-Colet, Tomasz Gorski, Ulisse Ferrari, Shayan Moghimyfiroozabad, Jennifer S. Goldman, Bartosz Telenczuk, Cristiano Capone, Thierry Bal, Matteo Di Volo, Alain Destexhe
Cerebral Cortex

17 Nonlinear neural network dynamics accounts for human confidence in a sequence of perceptual decisions
Kevin Berlemont, Jean-Remy Martin, Jérôme Sackur, Jean-Pierre Nadal
Scientific Reports

18 Scaling laws and snap-through events in indentation of perforated membranes
Fei Jia, Martine Ben Amar
Journal of the Mechanics and Physics of Solids

19 A tensile ring drives tissue flows to shape the gastrulating amniote embryo
Mehdi Saadaoui, Didier Rocancourt, Julian Roussel, Francis Corson, Jerome Gros
Science

20 From growing bubbles and dendrites to biological forms
Vincent Hakim
Comptes Rendus Mécanique

21 Tribute to an exemplary man: Yves Couder
Martine Ben Amar, Laurent Limat, Olivier Pouliquen, Emmanuel Villermaux
Comptes Rendus Mécanique

22 Tip growth in morpho-elasticity
Martine Ben Amar, Julien Dervaux
Comptes Rendus Mécanique

23 The geometry of information coding in correlated neural populations
Rava Azeredo da Silveira, Fred Rieke
Annual Review of Neuroscience

24 Lifetime of a structure evolving by cluster aggregation and particle loss, and application to postsynaptic scaffold domains
Vincent Hakim, Jonas Ranft
Physical Review E

25 Modeling morphogenesis on epithelial tissues : from forces to geometry and back
Diego Contreras
-THESE-

26 Regulation of Notch output dynamics via specific E(spl)-HLH factors during bristle patterning in Drosophila
Lydie Couturier, Khalil Mazouni, Francis Corson, François Schweisguth
Nature Communications

27 Chemotaxis as a navigation strategy to boost range expansion
Jonas Cremer, Tomoya Honda, Ying Tang, Jerome Wong-Ng, Massimo Vergassola, Terence Hwa
Nature

28 Progressive recruitment of distal MEC-4 channels determines touch response strength in C. elegans
Samata Katta, Alessandro Sanzeni, Alakananda Das, Massimo Vergassola, Miriam Goodman
Journal of General Physiology

29 Growth and remodelling of living tissues: perspectives, challenges and opportunities
Davide Ambrosi, Martine Ben Amar, Christian Cyron, Antonio Desimone, Alain Goriely, Jay Humphrey, Ellen Kuhl
Journal of the Royal Society Interface

30 Self-Organization in Pattern Formation
François Schweisguth, Francis Corson
Developmental Cell

31 Noisy Memory and Over-Reaction to News
Rava Azeredo da Silveira, Michael Woodford
American Economic Association Papers and Proceedings

32 Self-Organized Nuclear Positioning Synchronizes the Cell Cycle in Drosophila Embryos
Victoria Deneke, Alberto Puliafito, Daniel Krueger, Avaneesh Narla, Alessandro de Simone, Luca Primo, Massimo Vergassola, Stefano de Renzis, Stefano Di Talia
Cell

33 Residential income segregation: A behavioral model of the housing market
Marco Pangallo, Jean-Pierre Nadal, Annick Vignes
Journal of Economic Behavior & Organization

34 Functional Diversity in the Retina Improves the Population Code
Michael Berry Ii, Felix Lebois, Avi Ziskind, Rava Azeredo da Silveira
Neural Computation

35 Perceptual decision making: Biases in post-error reaction times explained by attractor network dynamics
Kevin Berlemont, Jean-Pierre Nadal
Journal of Neuroscience

36 Glutamate spillover in C. elegans triggers repetitive behavior through presynaptic activation of MGL-2/mGluR5
Menachem Katz, Francis Corson, Wolfgang Keil, Anupriya Singhal, Andrea Bae, Yun Lu, Yupu Liang, Shai Shaham
Nature Communications

37 Clonal pattern dynamics in tumor: the concept of cancer stem cells
Fabrizio Olmeda, Martine Ben Amar
Scientific Reports

38 SNARE Machinery is optimized for ultra-fast fusion
Fabio Manca, Frédéric Pincet, Lev Truskinovsky, James E Rothman, Lionel Foret, Matthieu Caruel
Proceedings of the National Academy of Sciences of the United States of America

39 Physics of growing biological tissues: the complex cross-talk between cell activity, growth and resistance
Martine Ben Amar, Pierre Nassoy, Loïc Le Goff
Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences

39

Publications

5

Years

Biophysique