Publications

Disordered systems and applications

1 Curvature-driven pathways interpolating between stationary points: the case of the pure spherical 3-spin model
Alessandro Pacco, Giulio Biroli, Valentina Ros
Journal of Physics A: Mathematical and Theoretical

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2 Dynamic heterogeneity at the experimental glass transition predicted by transferable machine learning
Gerhard Jung, Giulio Biroli, Ludovic Berthier
Physical Review B

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3 Interactions and migration rescuing ecological diversity
Giulia Garcia Lorenzana, Ada Altieri, Giulio Biroli
PRX Life

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4 Reducing finite-size effects with reweighted renormalization group transformations
Dimitrios Bachtis
Physical Review E

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5 Finding defects in glasses through machine learning
Simone Ciarella, Dmytro Khomenko, Ludovic Berthier, Felix Mocanu, David Reichman, Camille Scalliet, Francesco Zamponi
Nature Communications

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6 Multiscale Data-Driven Energy Estimation and Generation
Tanguy Marchand, Misaki Ozawa, Giulio Biroli, Stéphane Mallat
Physical Review X

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7 Scaling Description of Dynamical Heterogeneity and Avalanches of Relaxation in Glass-Forming Liquids
Ali Tahaei, Giulio Biroli, Misaki Ozawa, Marko Popović, Matthieu Wyart
Physical Review X

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8 Predicting Dynamic Heterogeneity in Glass-Forming Liquids by Physics-informed Machine Learning
Gerhard Jung, Giulio Biroli, Ludovic Berthier
Physical Review Letters

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9 Elasticity, Facilitation, and Dynamic Heterogeneity in Glass-Forming Liquids
Misaki Ozawa, Giulio Biroli
Physical Review Letters

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10 Evolution of Local Structural Motifs in Colloidal Quantum Dot Semiconductor Nanocrystals Leading to Nanofaceting
Bo Hou, Felix Cosmin Mocanu, Yuljae Cho, Jongchul Lim, Jiangtao Feng, Jingchao Zhang, John Hong, Sangyeon Pak, Jong Bae Park, Young-Woo Lee, Juwon Lee, Byung-Sung Kim, Stephen M Morris, Jung Inn Sohn, Seungnam Cha, Jong Min Kim
Nano Letters

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11 Machine-learning-assisted Monte Carlo fails at sampling computationally hard problems
Simone Ciarella, Jeanne Trinquier, Martin Weigt, Francesco Zamponi
Machine Learning: Science and Technology

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12 Asymptotic Errors for Teacher-Student Convex Generalized Linear Models (or : How to Prove Kabashima's Replica Formula)
Cedric Gerbelot, Alia Abbara, Florent Krzakala
IEEE Transactions on Information Theory

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13 Microscopic observation of two-level systems in a metallic glass model
Felix Mocanu, Ludovic Berthier, Simone Ciarella, Dmytro Khomenko, David Reichman, Camille Scalliet, Francesco Zamponi
Journal of Chemical Physics

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14 Cosmology with cosmic web environments II. Redshift-space auto and cross power spectra
Tony Bonnaire, Joseph Kuruvilla, Nabila Aghanim, Aurélien Decelle
Astronomy and Astrophysics - A&A

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15 Bootstrapping traceless symmetric $O(N)$ scalars
Marten Reehorst, Maria Refinetti, Alessandro Vichi
SciPost Physics

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16 Creating bulk ultrastable glasses by random particle bonding
Misaki Ozawa, Yasutaka Iwashita, Walter Kob, Francesco Zamponi
Nature Communications

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17 Finite-Disorder Critical Point in the Yielding Transition of Elastoplastic Models
Saverio Rossi, Giulio Biroli, Misaki Ozawa, Gilles Tarjus, Francesco Zamponi
Physical Review Letters

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18 Gradient descent dynamics and the jamming transition in infinite dimensions
Alessandro Manacorda, Francesco Zamponi
Journal of Physics A: Mathematical and Theoretical

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19 Equilibrium fluctuations in mean-field disordered models
Giampaolo Folena, Giulio Biroli, Patrick Charbonneau, Yi Hu, Francesco Zamponi
Physical Review E

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20 Marginal stability of soft anharmonic mean field spin glasses
Giampaolo Folena, Pierfrancesco Urbani
Journal of Statistical Mechanics: Theory and Experiment

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21 Local Dynamical Heterogeneity in Simple Glass Formers
Giulio Biroli, Patrick Charbonneau, Giampaolo Folena, Yi Hu, Francesco Zamponi
Physical Review Letters

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22 Glasses and aging: A Statistical Mechanics Perspective
Francesco Arceri, François P. Landes, Ludovic Berthier, Giulio Biroli

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23 Supervised perceptron learning vs unsupervised Hebbian unlearning: Approaching optimal memory retrieval in Hopfield-like networks
Marco Benedetti, Enrico Ventura, Enzo Marinari, Giancarlo Ruocco, Francesco Zamponi
Journal of Chemical Physics

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24 Author Correction: Efficient generative modeling of protein sequences using simple autoregressive models
Jeanne Trinquier, Guido Uguzzoni, Andrea Pagnani, Francesco Zamponi, Martin Weigt
Nature Communications

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25 Rare events and disorder control the brittle yielding of well-annealed amorphous solids
Misaki Ozawa, Ludovic Berthier, Giulio Biroli, Gilles Tarjus
Physical Review Research

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26 Modeling sequence-space exploration and emergence of epistatic signals in protein evolution
M Bisardi, J Rodriguez-Rivas, Francesco Zamponi, M Weigt
Molecular Biology and Evolution

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27 adabmDCA: adaptive Boltzmann machine learning for biological sequences
Anna Paola Muntoni, Andrea Pagnani, Martin Weigt, Francesco Zamponi
BMC Bioinformatics

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28 Efficient generative modeling of protein sequences using simple autoregressive models
Jeanne Trinquier, Guido Uguzzoni, Andrea Pagnani, Francesco Zamponi, Martin Weigt
Nature Communications

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29 Three simple scenarios for high-dimensional sphere packings
Patrick Charbonneau, Peter Morse, Will Perkins, Francesco Zamponi
Physical Review E

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30 Active matter in infinite dimensions: Fokker–Planck equation and dynamical mean-field theory at low density
Francesco Zamponi, Thibaut Arnoulx de Pirey, Alessandro Manacorda, Frédéric van Wijland
Journal of Chemical Physics

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31 Sparse generative modeling via parameter-reduction of Boltzmann machines: application to protein-sequence families
Pierre Barrat-Charlaix, Anna Paola Muntoni, Kai Shimagaki, Martin Weigt, Francesco Zamponi
Physical Review E

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32 Properties of Equilibria and Glassy Phases of the Random Lotka-Volterra Model with Demographic Noise
Ada Altieri, Félix Roy, Chiara Cammarota, Giulio Biroli
Physical Review Letters

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33 Mean-Field Caging in a Random Lorentz Gas
Giulio Biroli, Patrick Charbonneau, Yi Hu, Harukuni Ikeda, Grzegorz Szamel, Francesco Zamponi
Journal of Physical Chemistry B

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34 Good speciation and endogenous business cycles in a constraint satisfaction macroeconomic model
Dhruv Sharma, Jean-Philippe Bouchaud, Marco Tarzia, Francesco Zamponi
Journal of Statistical Mechanics: Theory and Experiment

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35 Random Assignment Problems on 2d Manifolds
Dario Benedetto, Emanuele Caglioti, Sergio Caracciolo, Matteo d'Achille, Gabriele Sicuro, Andrea Sportiello
Journal of Statistical Physics

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36 Relationship between two-level systems and quasilocalized normal modes in glasses
Dmytro Khomenko, David Reichman, Francesco Zamponi
Physical Review Materials

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37 Low-frequency vibrational spectrum of mean-field disordered systems
Eran Bouchbinder, Edan Lerner, Corrado Rainone, Pierfrancesco Urbani, Francesco Zamponi
Physical Review B

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38 Elastoplasticity Mediates Dynamical Heterogeneity Below the Mode-Coupling Temperature
Rahul N Chacko, François P. Landes, Giulio Biroli, Olivier Dauchot, Andrea J Liu, David R Reichman
Physical Review Letters

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39 V-, U-, L-or W-shaped economic recovery after Covid-19: Insights from an Agent Based Model
Dhruv Sharma, Jean-Philippe Bouchaud, Stanislao Gualdi, Marco Tarzia, Francesco Zamponi
PLoS ONE

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40 Interplay between percolation and glassiness in the random Lorentz gas
Giulio Biroli, Patrick Charbonneau, Eric I. Corwin, Yi Hu, Harukuni Ikeda, Grzegorz Szamel, Francesco Zamponi
Physical Review E

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41 Searching for the Gardner transition in glassy glycerol
Samuel Albert, Giulio Biroli, François Ladieu, Roland Tourbot, Pierfrancesco Urbani
Physical Review Letters

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42 Dynamical instantons and activated processes in mean-field glass models
Valentina Ros, Giulio Biroli, Chiara Cammarota
SciPost Physics

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43 Generalisation error in learning with random features and the hidden manifold model
Federica Gerace, Bruno Loureiro, Florent Krzakala, Marc Mezard, Lenka Zdeborová
Journal of Statistical Mechanics: Theory and Experiment

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44 Mean-field model of interacting quasilocalized excitations in glasses
Corrado Rainone, Pierfrancesco Urbani, Francesco Zamponi, Edan Lerner, Eran Bouchbinder
SciPost Physics Core

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45 Out-of-equilibrium phase diagram of the quantum random energy model
Giulio Biroli, Davide Facoetti, Marco Schiró, Marco Tarzia, Pierpaolo Vivo
Physical Review B

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46 Large deviations of extreme eigenvalues of generalized sample covariance matrices
Antoine Maillard
EPL - Europhysics Letters

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47 Dynamical mean-field theory for stochastic gradient descent in Gaussian mixture classification
Francesca Mignacco, Florent Krzakala, Pierfrancesco Urbani, Lenka Zdeborová

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48 On the Number of Limit Cycles in Diluted Neural Networks
Sungmin Hwang, Enrico Lanza, Giorgio Parisi, Jacopo Rocchi, Giancarlo Ruocco, Francesco Zamponi
Journal of Statistical Physics

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49 Aligning biological sequences by exploiting residue conservation and coevolution
Anna Paola Muntoni, Andrea Pagnani, Martin Weigt, Francesco Zamponi
Physical Review E

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50 Modelling the influence of data structure on learning in neural networks: the hidden manifold model
Sebastian Goldt, Marc Mézard, Florent Krzakala, Lenka Zdeborová
Physical Review X

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