2025

1   An independent coding scheme for idiothetic distance in the hippocampus
 Mathilde Nordlund, Nicolas Levernier, Massimiliano Trippa, Romain Bourboulou, Geoffrey Marti, Rémi Monasson, Hervé Rouault, Jérôme Epsztein, Julie Koenig-Gambini
2025 - Current Biology
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2   Strong, but not Weak, Noise Correlations are Beneficial for Population Coding
 Gabriel Mahuas, Thomas Buffet, Olivier Marre, Ulisse Ferrari, Thierry Mora
2025 - PRX Life
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3   Divergent B-cell repertoire remodelling by mRNA, DNA and live attenuated vaccines in fish
 Dean Porter, Catherine Collins, Andrea Mazzolini, Luc Jouneau, Vanessa Mhanna, Céline Coiffier, Mathilde Peruzzi, Yan Jaszczyszyn, Encarnita Mariotti-Ferrandiz, François Huetz, Bertrand Collet, Thierry Mora, Aleksandra Walczak, Bernard Verrier, Pierre Boudinot
2025 - NPJ vaccines
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4   Optimizing Information Transmission in Neural Induction Constrains Cell Surface Contacts of Ascidian Embryos
 Rossana Bettoni, Geneviève Dupont, Aleksandra M Walczak, Sophie de Buyl
2025 - PRX Life
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5   Generative Modeling of RNA Sequence Families with Restricted Boltzmann Machines
 Jorge Fernandez-De-Cossio-Diaz
2025 -
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6   Inferring Resource Competition in Microbial Communities from Time Series
 Xiaowen Chen, Kyle Crocker, Seppe Kuehn, Aleksandra Walczak, Thierry Mora
2025 - PRX Life
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7   Learning evolutionary parameters from genealogies using allelic trees
 Antoine Aragon, Amaury Lambert, Thierry Mora, Aleksandra M Walczak
2025 - Genetics
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8   How Host Mobility Patterns Shape Antigenic Escape During Viral-Immune Coevolution
 Natalie Blot, Caelan Brooks, Daniel Swartz, Eslam Abdelaleem, Martin Garic, Andrea Iglesias-Ramas, Michael Pasek, Thierry Mora, Aleksandra Walczak
2025 - PRX Life
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9   Continuous replenishment of the dysfunctional CD8 T cell axis is associated with response to chemoimmunotherapy in advanced breast cancer
 Christina Metoikidou, Vadim Karnaukhov, Bram Boeckx, Eleonora Timperi, Pierre-Emmanuel Bonté, Ling Wang, Marion Espenel, Benoit Albaud, Delphine Loirat, Xiaoxiao Wang, Christos Sotiriou, Philippe Aftimos, Kevin Punie, Hans Wildiers, Viktorija Labroska, Ming-Wei Wang, Joshua Waterfall, Martine Piccart-Gebhart, Thierry Mora, Aleksandra Walczak, Olivier Lantz, Laurence Buisseret, Diether Lambrechts, Sebastian Amigorena, Emanuela Romano
2025 - Cell Reports Medicine
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10   Learning predictive signatures of HLA type from T-cell repertoires
 María Ruiz Ortega, Mikhail Pogorelyy, Anastasia Minervina, Paul Thomas, Thierry Mora, Aleksandra Walczak
2025 - PLoS Computational Biology
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11   Profiling of HIV-1 elite neutralizer cohort reveals a CD4bs bnAb for HIV-1 prevention and therapy
 Lutz Gieselmann, Andrew Delaitsch, Malena Rohde, Henning Gruell, Christoph Kreer, Meryem Seda Ercanoglu, Harry Gristick, Philipp Schommers, Elvin Ahmadov, Caelan Radford, Andrea Mazzolini, Lily Zhang, Anthony West, Johanna Worczinski, Anna Momot, Maren Reichwein, Jacqueline Knüfer, Ricarda Stumpf, Nonhlanhla Mkhize, Haajira Kaldine, Sinethemba Bhebhe, Sharvari Deshpande, Federico Giovannoni, Erin Stefanutti, Fabio Benigni, Colin Havenar-Daughton, Davide Corti, Arne Kroidl, Anurag Adhikari, Aubin Nanfack, Georgia Ambada, Ralf Duerr, Lucas Maganga, Wiston William, Nyanda Ntinginya, Timo Wolf, Christof Geldmacher, Michael Hoelscher, Clara Lehmann, Penny Moore, Thierry Mora, Aleksandra Walczak, Peter Gilbert, Nicole Doria-Rose, Yunda Huang, Jesse Bloom, Michael Seaman, Pamela Bjorkman, Florian Klein
2025 - Nature Immunology
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12   Designing molecular RNA switches with Restricted Boltzmann machines
 Jorge Fernandez-De-Cossio-Diaz, Pierre Hardouin, Francois-Xavier Lyonnet Du Moutier, Andrea Di Gioacchino, Bertrand Marchand, Yann Ponty, Bruno Sargueil, Rémi Monasson, Simona Cocco
2025 - Nature Communications
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Publications
2025

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