Publications

Biophysique et Neuroscience Théoriques

1 Random Compressed Coding with Neurons
Simone Blanco Malerba, Mirko Pieropan, Yoram Burak, Rava Azeredo da Silveira
2025 - Cell Reports

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2 Stepwise molecular specification of excitatory synapse diversity onto cerebellar Purkinje cells
Maëla Paul, Séverine Sigoillot, Léa Marti, Francisco Urra Quiroz, Marine Delagrange, Hiu Cheung, David Martinelli, Elie Oriol, Vincent Hakim, Philippe Mailly, Fekrije Selimi
2024 - Nature Neuroscience

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3 Continuous Quasi-Attractors dissolve with too much – or too little – variability
Francesca Schönsberg, Rémi Monasson, Alessandro Treves
2024 - PNAS Nexus

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4 An indentation method to determine the constitutive parameters of hyperelastic films under large deformation: Theoretical model, experiments and simulations
Haoyuan Che, Martine Ben Amar, Wei Zhu, Shengjun Fan, Jinsong Leng, Fei Jia, Yanju Liu
2024 - International Journal of Solids and Structures

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5 Physical forces drive C. elegans embryonic deformation
Ting Wang, Martine Ben Amar
2024 - International Journal of Non-Linear Mechanics

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6 Self-organized tissue mechanics underlie embryonic regulation
Paolo Caldarelli, Alexander Chamolly, Aurélien Villedieu, Olinda Alegria-Prévot, Carole Phan, Jerome Gros, Francis Corson
2024 - Nature

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7 Inverse blebs operate as hydraulic pumps during mouse blastocyst formation
Markus F Schliffka, Julien G Dumortier, Diane Pelzer, Arghyadip Mukherjee, Jean-Léon Maître
2024 - Nature Cell Biology

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8 [∼Re] Exploration in Model-based Reinforcement Learning by Empirically Estimating Learning Progress
Augustin Chartouny, Jean-Pierre Nadal, Mehdi Khamassi
2024 - The ReScience journal

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9 The Sphericity Paradox and the Role of Hoop Stresses in Free Subduction on a Sphere
Stéphanie Chaillat, Gianluca Gerardi, Yida Li, Alexander Chamolly, Zhong‐hai Li, Neil M. Ribe
2024 - Journal of Geophysical Research : Solid Earth

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10 A two-dimensional vertex model for curvy cell-cell interfaces at the subcellular scale
Kyungeun Kim, J M Schwarz, Martine Ben Amar
2024 - Journal of the Royal Society Interface

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11 Long-wavelength traveling waves of vasomotion modulate the perfusion of cortex
Thomas Broggini, Jacob Duckworth, Xiang Ji, Rui Liu, Xinyue Xia, Philipp Mächler, Iftach Shaked, Leon Paul Munting, Satish Iyengar, Michael Kotlikoff, Susanne van Veluw, Massimo Vergassola, Gal Mishne, David Kleinfeld
2024 - Neuron

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12 Cyclic muscle contractions reinforce the actomyosin motors and mediate the full elongation of C. elegans embryo
Anna Dai, Martine Ben Amar
2024 - eLife

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13 Uncovering multiscale structure in the variability of larval zebrafish navigation
Gautam Sridhar, Massimo Vergassola, João C Marques, Michael B Orger, Antonio Carlos Costa, Claire Wyart
2024 - Proceedings of the National Academy of Sciences of the United States of America

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14 Giant organelle vesicles to uncover intracellular membrane mechanics and plasticity
Alexandre Santinho, Maxime Carpentier, Julio Lopes Sampaio, Mohyeddine Omrane, Abdou Rachid Thiam
2024 - Nature Communications

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15 Modelling lipid rafts formation through chemo-mechanical interplay triggered by receptor–ligand binding
Chiara Bernard, Angelo Rosario Carotenuto, Nicola Maria Pugno, Massimiliano Fraldi, Luca Deseri
2024 - Biomechanics and Modeling in Mechanobiology

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16 Perilipin membrane integration determines lipid droplet heterogeneity in differentiating adipocytes
Mario Majchrzak, Ozren Stojanović, Dalila Ajjaji, Kalthoum Ben M’barek, Mohyeddine Omrane, Abdou Rachid Thiam, Robin Klemm
2024 - Cell Reports

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17 Olfactory cues and memories in animal navigation
Thierry Emonet, Massimo Vergassola
2024 - Nature Reviews Physics

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18 Reconstitution of ORP-mediated lipid exchange coupled to PI4P metabolism
Nicolas Fuggetta, Nicola Rigolli, Maud Magdeleine, Amazigh Hamaï, Agnese Seminara, Guillaume Drin
2024 - Proceedings of the National Academy of Sciences of the United States of America

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19 Resource-rational account of sequential effects in human prediction
Arthur Prat-Carrabin, Florent Meyniel, Rava Azeredo da Silveira
2024 - eLife

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20 Sticky issues in turbulent transport
Antonio Celani, Gautam Reddy, Massimo Vergassola
2024 - Annales Henri Poincaré

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21 Information theoretic study of the neural geometry induced by category learning
Laurent Bonnasse-Gahot, Jean-Pierre Nadal
2023 -

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22 Optimal policies for Bayesian olfactory search in turbulent flows
R A Heinonen, L Biferale, A Celani, M Vergassola
2023 - Physical Review E

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23 Two-fluid dynamics and micron-thin boundary layers shape cytoplasmic flows in early Drosophila embryos
Claudio Hernández-López, Alberto Puliafito, Yitong Xu, Ziqi Lu, Stefano Di Talia, Massimo Vergassola
2023 - Proceedings of the National Academy of Sciences of the United States of America

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24 Thermo-aqueous coupling behaviors for shape memory hydrogels: A statistical–mechanical model and simulations faced with experiments
Yunqiang Hu, Chengjun Zeng, Martine Ben Amar, Fei Jia, Yanju Liu, Jinsong Leng
2023 - International Journal of Solids and Structures

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25 Onsager’s variational principle in proliferating biological tissues, in presence of activity and anisotropy
Joseph Ackermann, Martine Ben Amar
2023 - The European Physical Journal Plus

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26 LC3 conjugation to lipid droplets
Mohyeddine Omrane, Thomas Melia, Abdou Rachid Thiam
2023 - Autophagy

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27 Curvature in Biological Systems: Its Quantification, Emergence, and Implications across the Scales
Barbara Schamberger, Ricardo Ziege, Karine Anselme, Martine Ben Amar, Michał Bykowski, André P G Castro, Amaia Cipitria, Rhoslyn A Coles, Rumiana Dimova, Michaela Eder, Sebastian Ehrig, Luis M Escudero, Myfanwy E Evans, Paulo R Fernandes, Peter Fratzl, Liesbet Geris, Notburga Gierlinger, Edouard Hannezo, Aleš Iglič, Jacob J K Kirkensgaard, Philip Kollmannsberger, Łucja Kowalewska, Ioannis Papantoniou, Laurent Pieuchot, Tiago H V Pires, Lars D Renner, Andrew O Sageman‐furnas, Gerd E Schröder‐turk, Anupam Sengupta, Vikas R Sharma, Antonio Tagua, Caterina Tomba, Xavier Trepat, Sarah L Waters, Edwina F Yeo, Andreas Roschger, Cécile M Bidan, John W C Dunlop
2023 - Advanced Materials

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28 Curvature-Regulated Multiphase Patterns in Tori
Ting Wang, Zhijun Dai, Michel Potier-Ferry, Fan Xu
2023 - Physical Review Letters

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29 Metamorphoses of the flow past an obstacle of a resonantly driven bistable polariton fluid
Vincent Hakim, Simon Pigeon, Amandine Aftalion
2023 - Physical Review B

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30 Stochasticity and Drug Effects in Dynamical Model for Cancer Stem Cells
Ludovico Mori, Martine Ben Amar
2023 - Cancers

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31 A comprehensive neural simulation of slow-wave sleep and highly responsive wakefulness dynamics
Jennifer S. Goldman, Lionel Kusch, David Aquilue, Bahar Hazal Yalçınkaya, Damien Depannemaecker, Kevin Ancourt, Trang-Anh Nghiem, Viktor Jirsa, Alain Destexhe
2023 - Frontiers in Computational Neuroscience

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32 Beta oscillations and waves in motor cortex can be accounted for by the interplay of spatially structured connectivity and fluctuating inputs
Ling Kang, Jonas Ranft, Vincent Hakim
2023 - eLife

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33 Application of spin glass ideas in social sciences, economics and finance
Jean Philippe Bouchaud, Matteo Marsili, Jean-Pierre Nadal
2023 -

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34 Morphogenesis in space offers challenges and opportunities for soft matter and biophysics
Martine Ben Amar, Pasquale Ciarletta, Pierre A Haas
2023 - Communications Physics

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35 HaloTag-based reporters for sparse labeling and cell tracking
Lydie Couturier, Juan Luna, Khalil Mazouni, Claire Mestdagh, Minh-Son Phan, Francis Corson, Francois Schweisguth
2022 - Fly

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36 Minimizing the Elastic Energy of Growing Leaves by Conformal Mapping
Anna Dai, Martine Ben Amar
2022 - Physical Review Letters

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37 Manipulating the nature of embryonic mitotic waves
Luke Hayden, Woonyung Hur, Massimo Vergassola, Stefano Di Talia
2022 - Current Biology

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38 Alternation emerges as a multi-modal strategy for turbulent odor navigation
Nicola Rigolli, Gautam Reddy, Agnese Seminara, Massimo Vergassola
2022 - eLife

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39 Waves in embryonic development
Stefano Di Talia, Massimo Vergassola
2022 - Annual review of biophysics and bioengineering

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40 Cullin-5 mutants reveal collective sensing of the nucleocytoplasmic ratio in Drosophila embryogenesis
Luke Hayden, Anna Chao, Victoria E Deneke, Massimo Vergassola, Alberto Puliafito, Stefano Di Talia
2022 - Current Biology

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41 ICU Bed Availability Monitoring and analysis in the Grand Est region of France during the COVID-19 epidemic
Consortium Icubam, Laurent Bonnasse-Gahot, Maxime Dénès, Gabriel Dulac-Arnold, Sertan Girgin, François Husson, Valentin Iovene, Julie Josse, Antoine Kimmoun, François Landes, Jean-Pierre Nadal, Romain Primet, Frederico Quintao, Pierre Guillaume Raverdy, Vincent Rouvreau, Olivier Teboul, Roman Yurchak
2022 - Statistique et Société

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42 Morpho-elasticity of human pluripotent stem cell cysts
Joseph Ackermann, Philippe J.R. Cohen, Kevin Alessandri, Andrea Leonard, Pierre Nassoy, Jean-François Joanny, Martine Ben Amar
2022 - Journal of the Mechanics and Physics of Solids

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43 Fixational eye movements as active sensation for high visual acuity
Trang-Anh Nghiem, Oscar Dufour, Jenny Reiniger, Wolf Harmening, Rava Azeredo da Silveira
2022 - Proceedings of the National Academy of Sciences of the United States of America

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44 Affinity maturation for an optimal balance between long-term immune coverage and short-term resource constraints
Victor Chardès, Massimo Vergassola, Aleksandra Walczak, Thierry Mora
2022 - Proceedings of the National Academy of Sciences of the United States of America

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45 Categorical Perception: A Groundwork for Deep Learning
Laurent Bonnasse-Gahot, Jean-Pierre Nadal
2022 - Neural Computation

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46 Confidence-controlled Hebbian learning efficiently extracts category membership from stimuli encoded in view of a categorization task
Kevin Berlemont, Jean-Pierre Nadal
2022 - Neural Computation

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47 Sector search strategies for odor trail tracking
Gautam Reddy, Boris Shraiman, Massimo Vergassola
2021 - Proceedings of the National Academy of Sciences of the United States of America

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48 Fluid mechanics of free subduction on a sphere. Part 1. The axisymmetric case
Alexander Chamolly, Neil M. Ribe
2021 - Journal of Fluid Mechanics

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49 Modeling the mechanics of growing epithelia with a bilayer plate theory
Joseph Ackermann, Paul-Qiuyang Qu, Loïc Le Goff, Martine Ben Amar
2021 - The European Physical Journal Plus

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50 Machine learning and computational modeling approaches towards detection of pathological activity markers in the cortex
Ivan Lazarevich
2021 - -THESE-

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