Publications

Biophysique et Neuroscience Théoriques

51 Stochasticity and Drug Effects in Dynamical Model for Cancer Stem Cells
Ludovico Mori, Martine Ben Amar
2023 - Cancers

DOI
PDF
HAL

52 A comprehensive neural simulation of slow-wave sleep and highly responsive wakefulness dynamics
Jennifer S. Goldman, Lionel Kusch, David Aquilue, Bahar Hazal Yalçınkaya, Damien Depannemaecker, Kevin Ancourt, Trang-Anh Nghiem, Viktor Jirsa, Alain Destexhe
2023 - Frontiers in Computational Neuroscience

DOI
PDF
HAL

53 Application of spin glass ideas in social sciences, economics and finance
Jean Philippe Bouchaud, Matteo Marsili, Jean-Pierre Nadal
2023 -

DOI
PDF
HAL

54 Beta oscillations and waves in motor cortex can be accounted for by the interplay of spatially structured connectivity and fluctuating inputs
Ling Kang, Jonas Ranft, Vincent Hakim
2023 - eLife

DOI
PDF
HAL

55 Morphogenesis in space offers challenges and opportunities for soft matter and biophysics
Martine Ben Amar, Pasquale Ciarletta, Pierre A Haas
2023 - Communications Physics

DOI
HAL

56 HaloTag-based reporters for sparse labeling and cell tracking
Lydie Couturier, Juan Luna, Khalil Mazouni, Claire Mestdagh, Minh-Son Phan, Francis Corson, Francois Schweisguth
2022 - Fly

DOI
PDF
HAL

57 Minimizing the Elastic Energy of Growing Leaves by Conformal Mapping
Anna Dai, Martine Ben Amar
2022 - Physical Review Letters

DOI
HAL

58 Manipulating the nature of embryonic mitotic waves
Luke Hayden, Woonyung Hur, Massimo Vergassola, Stefano Di Talia
2022 - Current Biology

DOI
PDF
HAL

59 Alternation emerges as a multi-modal strategy for turbulent odor navigation
Nicola Rigolli, Gautam Reddy, Agnese Seminara, Massimo Vergassola
2022 - eLife

DOI
PDF
HAL

60 Waves in embryonic development
Stefano Di Talia, Massimo Vergassola
2022 - Annual review of biophysics and bioengineering

DOI
HAL

61 Cullin-5 mutants reveal collective sensing of the nucleocytoplasmic ratio in Drosophila embryogenesis
Luke Hayden, Anna Chao, Victoria E Deneke, Massimo Vergassola, Alberto Puliafito, Stefano Di Talia
2022 - Current Biology

DOI
HAL

62 ICU Bed Availability Monitoring and analysis in the Grand Est region of France during the COVID-19 epidemic
Consortium Icubam, Laurent Bonnasse-Gahot, Maxime Dénès, Gabriel Dulac-Arnold, Sertan Girgin, François Husson, Valentin Iovene, Julie Josse, Antoine Kimmoun, François Landes, Jean-Pierre Nadal, Romain Primet, Frederico Quintao, Pierre Guillaume Raverdy, Vincent Rouvreau, Olivier Teboul, Roman Yurchak
2022 - Statistique et Société

DOI
PDF
HAL

63 Morpho-elasticity of human pluripotent stem cell cysts
Joseph Ackermann, Philippe J.R. Cohen, Kevin Alessandri, Andrea Leonard, Pierre Nassoy, Jean-François Joanny, Martine Ben Amar
2022 - Journal of the Mechanics and Physics of Solids

DOI
HAL

64 Affinity maturation for an optimal balance between long-term immune coverage and short-term resource constraints
Victor Chardès, Massimo Vergassola, Aleksandra Walczak, Thierry Mora
2022 - Proceedings of the National Academy of Sciences of the United States of America

DOI
PDF
HAL

65 Categorical Perception: A Groundwork for Deep Learning
Laurent Bonnasse-Gahot, Jean-Pierre Nadal
2022 - Neural Computation

DOI
PDF
HAL

66 Confidence-controlled Hebbian learning efficiently extracts category membership from stimuli encoded in view of a categorization task
Kevin Berlemont, Jean-Pierre Nadal
2022 - Neural Computation

DOI
HAL

67 Sector search strategies for odor trail tracking
Gautam Reddy, Boris Shraiman, Massimo Vergassola
2021 - Proceedings of the National Academy of Sciences of the United States of America

DOI
PDF
HAL

68 Fluid mechanics of free subduction on a sphere. Part 1. The axisymmetric case
Alexander Chamolly, Neil M. Ribe
2021 - Journal of Fluid Mechanics

DOI
HAL

69 Modeling the mechanics of growing epithelia with a bilayer plate theory
Joseph Ackermann, Paul-Qiuyang Qu, Loïc Le Goff, Martine Ben Amar
2021 - The European Physical Journal Plus

DOI
PDF
HAL

70 Machine learning and computational modeling approaches towards detection of pathological activity markers in the cortex
Ivan Lazarevich
2021 - -THESE-

DOI
HAL

71 Geometry of Gene Regulatory Dynamics
David A Rand, Archishman Raju, Meritxell Sáez, Francis Corson, Eric D Siggia
2021 - Proceedings of the National Academy of Sciences of the United States of America

DOI
PDF
HAL

72 Origin of gradients in lipid density and surface tension between connected lipid droplet and bilayer
Abdou Rachid Thiam, Aymeric Chorlay, Lionel Forêt
2021 - Biophysical Journal

DOI
PDF
HAL

73 Human Inference in Changing Environments with Temporal Structure
Arthur Prat-Carrabin, Robert Wilson, Jonathan Cohen, Rava Azeredo da Silveira
2021 - Psychological Review

DOI
PDF
HAL

74 Multi-cellular aggregates, a model for living matter
Joseph Ackermann, Martine Ben Amar, J.-F. Joanny
2021 - Physics Reports

DOI
PDF
HAL

75 The geometry of information coding in correlated neural populations
Rava Azeredo da Silveira, Fred Rieke
2021 - Annual Review of Neuroscience

DOI
HAL

76 Biases and Variability from Costly Bayesian Inference
Arthur Prat-Carrabin, Florent Meyniel, Misha Tsodyks, Rava Azeredo da Silveira
2021 - Entropy

DOI
PDF
HAL

77 A suite of neurophotonic tools to underpin the contribution of internal brain states in fMRI
Philipp Mächler, Thomas Broggini, Celine Mateo, Martin Thunemann, Natalie Fomin-Thunemann, Patrick Doran, Ikbal Sencan, Kivilcim Kilic, Michèle Desjardins, Hana Uhlirova, Mohammad Yaseen, David Boas, Andreas Linninger, Massimo Vergassola, Xin Yu, Laura Lewis, Jonathan Polimeni, Bruce Rosen, Sava Sakadžić, Richard Buxton, Martin Lauritzen, David Kleinfeld, Anna Devor
2021 - Current Opinion in Biomedical Engineering

DOI
PDF
HAL

78 Reciprocal stabilization of glycine receptors and gephyrin scaffold proteins at inhibitory synapses
Thomas Chapdelaine, Vincent Hakim, Antoine Triller, Jonas Ranft, Christian G Specht
2021 - Biophysical Journal

DOI
PDF
HAL

79 Fat inclusions strongly alter membrane mechanics
Alexandre Santinho, Aymeric Chorlay, Lionel Foret, Abdou Rachid Thiam
2021 - Biophysical Journal

DOI
PDF
HAL

80 From growing bubbles and dendrites to biological forms
Vincent Hakim
2020 - Comptes Rendus. Mécanique

DOI
PDF
HAL

81 Synchronization, stochasticity and phase waves in neuronal networks with spatially-structured connectivity
Anirudh Kulkarni, Jonas Ranft, Vincent Hakim
2020 - Frontiers in Computational Neuroscience

DOI
PDF
HAL

82 Decision-making at a T-junction by gradient-sensing microscopic agents
Tanvi Gandhi, Jinzi Mac Huang, Antoine Aubret, Yaocheng Li, Sophie Ramananarivo, Massimo Vergassola, Jérémie Palacci
2020 - Physical Review Fluids

DOI
PDF
HAL

83 Tissue-wide coordination of epithelium-to-neural stem cell transition in the Drosophila optic lobe requires Neuralized
Chloé Shard, Juan Luna-Escalante, François Schweisguth
2020 - Journal of Cell Biology

DOI
PDF
HAL

84 Antagonistic odor interactions in olfactory sensory neurons are widespread in freely breathing mice
Joseph D Zak, Gautam Reddy, Massimo Vergassola, Venkatesh N Murthy
2020 - Nature Communications

DOI
PDF
HAL

85 From neural coding to decision-making
Kevin Berlemont
2020 - -THESE-

DOI
HAL

86 Detection of Topological Materials with Machine Learning
Nikolas Claussen, B. Andrei Bernevig, Nicolas Regnault
2020 - Physical Review B

DOI
PDF
HAL

87 Cholinergic switch between two types of slow waves in cerebral cortex
Trang-Anh Nghiem, Núria Tort-Colet, Tomasz Gorski, Ulisse Ferrari, Shayan Moghimyfiroozabad, Jennifer S. Goldman, Bartosz Telenczuk, Cristiano Capone, Thierry Bal, Matteo Di Volo, Alain Destexhe
2020 - Cerebral Cortex

DOI
PDF
HAL

88 Nonlinear neural network dynamics accounts for human confidence in a sequence of perceptual decisions
Kevin Berlemont, Jean-Remy Martin, Jérôme Sackur, Jean-Pierre Nadal
2020 - Scientific Reports

DOI
PDF
HAL

89 Physical and Mathematical Modeling in Oncology: Examples
Martine Ben Amar
2020 -

DOI
HAL

90 Scaling laws and snap-through events in indentation of perforated membranes
Fei Jia, Martine Ben Amar
2020 - Journal of the Mechanics and Physics of Solids

DOI
PDF
HAL

91 A tensile ring drives tissue flows to shape the gastrulating amniote embryo
Mehdi Saadaoui, Didier Rocancourt, Julian Roussel, Francis Corson, Jerome Gros
2020 - Science

DOI
PDF
HAL

92 Tribute to an exemplary man: Yves Couder
Martine Ben Amar, Laurent Limat, Olivier Pouliquen, Emmanuel Villermaux
2020 - Comptes Rendus. Mécanique

DOI
PDF
HAL

93 Tip growth in morpho-elasticity
Martine Ben Amar, Julien Dervaux
2020 - Comptes Rendus. Mécanique

DOI
HAL

94 Lifetime of a structure evolving by cluster aggregation and particle loss, and application to postsynaptic scaffold domains
Vincent Hakim, Jonas Ranft
2020 - Physical Review E

DOI
PDF
HAL

95 Modeling morphogenesis on epithelial tissues : from forces to geometry and back
Diego Contreras
2019 - -THESE-

DOI
HAL

96 Bridging single neuron dynamics to global brain states
Jennifer S Goldman, Núria Tort-Colet, Matteo Di Volo, Eduarda Susin, Jules Bouté, Mélissa Dali, Mallory Carlu, Trang-Anh Nghiem, Tomasz Gorski, Alain Destexhe
2019 - Frontiers in Systems Neuroscience

DOI
PDF
HAL

97 Regulation of Notch output dynamics via specific E(spl)-HLH factors during bristle patterning in Drosophila
Lydie Couturier, Khalil Mazouni, Francis Corson, François Schweisguth
2019 - Nature Communications

DOI
PDF
HAL

98 Chemotaxis as a navigation strategy to boost range expansion
Jonas Cremer, Tomoya Honda, Ying Tang, Jerome Wong-Ng, Massimo Vergassola, Terence Hwa
2019 - Nature

DOI
PDF
HAL

99 Progressive recruitment of distal MEC-4 channels determines touch response strength in C. elegans
Samata Katta, Alessandro Sanzeni, Alakananda Das, Massimo Vergassola, Miriam Goodman
2019 - Journal of General Physiology

DOI
PDF
HAL

100 Growth and remodelling of living tissues: perspectives, challenges and opportunities
Davide Ambrosi, Martine Ben Amar, Christian Cyron, Antonio Desimone, Alain Goriely, Jay Humphrey, Ellen Kuhl
2019 - Journal of the Royal Society Interface

DOI
PDF
HAL