2021
101 Parameters and determinants of responses to selection in antibody libraries
Steven Schulz, Sébastien Boyer, Matteo Smerlak, Simona Cocco, Rémi Monasson, Clément Nizak, Olivier Rivoire
2021 - PLoS Computational Biology
Steven Schulz, Sébastien Boyer, Matteo Smerlak, Simona Cocco, Rémi Monasson, Clément Nizak, Olivier Rivoire
2021 - PLoS Computational Biology
102 Survival probability and size of lineages in antibody affinity maturation
Marco Molari, Rémi Monasson, Simona Cocco
2021 - Physical Review E
Marco Molari, Rémi Monasson, Simona Cocco
2021 - Physical Review E
103 Immune fingerprinting through repertoire similarity
Thomas Dupic, Meriem Bensouda Koraichi, Anastasia Minervina, Mikhail Pogorelyy, Thierry Mora, Aleksandra Walczak
2021 - PLoS Genetics
Thomas Dupic, Meriem Bensouda Koraichi, Anastasia Minervina, Mikhail Pogorelyy, Thierry Mora, Aleksandra Walczak
2021 - PLoS Genetics
2020
104 Online characterization of the retinal network
Baptiste Lefebvre
2020 - -THESE-
Baptiste Lefebvre
2020 - -THESE-
105 Population variability in the generation and thymic selection of T-cell repertoires
Zachary Sethna, Giulio Isacchini, Thomas Dupic, Thierry Mora, Aleksandra Walczak, Yuval Elhanati
2020 - PLoS Computational Biology
Zachary Sethna, Giulio Isacchini, Thomas Dupic, Thierry Mora, Aleksandra Walczak, Yuval Elhanati
2020 - PLoS Computational Biology
106 A self-consistent probabilistic formulation for inference of interactions
Jorge Fernandez-De-Cossio, Jorge Fernandez-De-Cossio-Diaz, Yasser Perera-Negrin
2020 - Scientific Reports
Jorge Fernandez-De-Cossio, Jorge Fernandez-De-Cossio-Diaz, Yasser Perera-Negrin
2020 - Scientific Reports
107 A new inference approach for training shallow and deep generalized linear models of noisy interacting neurons
Gabriel Mahuas, Giulio Isacchini, Olivier Marre, Ulisse Ferrari, Thierry Mora
2020 -
Gabriel Mahuas, Giulio Isacchini, Olivier Marre, Ulisse Ferrari, Thierry Mora
2020 -
108 Modélisation et inférence Bayésienne pour la maturation d'affinité des anticorps
Marco Molari
2020 - -THESE-
Marco Molari
2020 - -THESE-
109 Low-dimensional continuous attractors in recurrent neural networks : from statistical physics to computational neuroscience
Aldo Battista
2020 - -THESE-
Aldo Battista
2020 - -THESE-
110 Learning the heterogeneous hypermutation landscape of immunoglobulins from high-throughput repertoire data
Natanael Spisak, Aleksandra Walczak, Thierry Mora
2020 - Nucleic Acids Research
Natanael Spisak, Aleksandra Walczak, Thierry Mora
2020 - Nucleic Acids Research
111 SOS: online probability estimation and generation of T-and B-cell receptors
Giulio Isacchini, Carlos Olivares, Armita Nourmohammad, Aleksandra Walczak, Thierry Mora
2020 - Bioinformatics
Giulio Isacchini, Carlos Olivares, Armita Nourmohammad, Aleksandra Walczak, Thierry Mora
2020 - Bioinformatics
112 A mechanism for hunchback promoters to readout morphogenetic positional information in less than a minute
Jonathan Desponds, Massimo Vergassola, Aleksandra Walczak
2020 - eLife
Jonathan Desponds, Massimo Vergassola, Aleksandra Walczak
2020 - eLife
113 Unsupervised Inference of Protein Fitness Landscape from Deep Mutational Scan
Jorge Fernandez-De-Cossio-Diaz, Guido Uguzzoni, Andrea Pagnani
2020 - Molecular Biology and Evolution
Jorge Fernandez-De-Cossio-Diaz, Guido Uguzzoni, Andrea Pagnani
2020 - Molecular Biology and Evolution
114 Blind deconvolution for spike inference from fluorescence recordings
Jérôme Tubiana, Sébastien Wolf, Thomas Panier, Georges Debregeas
2020 - Journal of Neuroscience Methods
Jérôme Tubiana, Sébastien Wolf, Thomas Panier, Georges Debregeas
2020 - Journal of Neuroscience Methods
115 An evolution-based model for designing chorismate mutase enzymes
William P Russ, Matteo Figliuzzi, Christian Stocker, Pierre Barrat-Charlaix, Michael Socolich, Peter Kast, Donald Hilvert, Remi Monasson, Simona Cocco, Martin Weigt, Rama Ranganathan
2020 - Science
William P Russ, Matteo Figliuzzi, Christian Stocker, Pierre Barrat-Charlaix, Michael Socolich, Peter Kast, Donald Hilvert, Remi Monasson, Simona Cocco, Martin Weigt, Rama Ranganathan
2020 - Science
116 Building General Langevin Models from Discrete Datasets
Federica Ferretti, Victor Chardès, Thierry Mora, Aleksandra Walczak, Irene Giardina
2020 - Physical Review X
Federica Ferretti, Victor Chardès, Thierry Mora, Aleksandra Walczak, Irene Giardina
2020 - Physical Review X
117 Quantitative modeling of the effect of antigen dosage on B-cell affinity distributions in maturating germinal centers
Marco Molari, Klaus Eyer, Jean Baudry, Simona Cocco, Remi Monasson
2020 - eLife
Marco Molari, Klaus Eyer, Jean Baudry, Simona Cocco, Remi Monasson
2020 - eLife
118 Generative models of T-cell receptor sequences
Giulio Isacchini, Zachary Sethna, Yuval Elhanati, Armita Nourmohammad, Aleksandra Walczak, Thierry Mora
2020 - Physical Review E
Giulio Isacchini, Zachary Sethna, Yuval Elhanati, Armita Nourmohammad, Aleksandra Walczak, Thierry Mora
2020 - Physical Review E
119 Spectrum of multispace Euclidean random matrices
Aldo Battista, Remi Monasson
2020 - Physical Review E
Aldo Battista, Remi Monasson
2020 - Physical Review E
120 Place-cell' emergence and learning of invariant data with restricted Boltzmann machines: breaking and dynamical restoration of continuous symmetries in the weight space
Moshir Harsh, Jérôme Tubiana, Simona Cocco, Rémi Monasson
2020 - Journal of Physics A: Mathematical and Theoretical
Moshir Harsh, Jérôme Tubiana, Simona Cocco, Rémi Monasson
2020 - Journal of Physics A: Mathematical and Theoretical
121 Primary and secondary anti-viral response captured by the dynamics and phenotype of individual T cell clones
Anastasia Minervina, Mikhail Pogorelyy, Ekaterina Komech, Vadim Karnaukhov, Petra Bacher, Elisa Rosati, Andre Franke, Dmitriy Chudakov, Ilgar Mamedov, Yuri Lebedev, Thierry Mora, Aleksandra M Walczak
2020 - eLife
Anastasia Minervina, Mikhail Pogorelyy, Ekaterina Komech, Vadim Karnaukhov, Petra Bacher, Elisa Rosati, Andre Franke, Dmitriy Chudakov, Ilgar Mamedov, Yuri Lebedev, Thierry Mora, Aleksandra M Walczak
2020 - eLife
122 Rapport de conjoncture 2019 : CID 51 Modélisation mathématique, informatique et physique pour les sciences du vivant
Franck Picard, Myriam Ferro, Alice Cleynen, Marie Doumic, Xavier Duchemin, Guillaume Fertin, Jonathan Filee, Philippe Juin, Romain Koszul, Rafael Laboissiere, Dominique Lavenier, Thérèse Malliavin, Antonio Monari, Isabelle Nondier, Françoise Peyrin, Pierre Pouget, David Vallenet, Rufin Vanrullen, Stéphane Vezian, Aleksandra Walczak
2020 - -REPORT-
Franck Picard, Myriam Ferro, Alice Cleynen, Marie Doumic, Xavier Duchemin, Guillaume Fertin, Jonathan Filee, Philippe Juin, Romain Koszul, Rafael Laboissiere, Dominique Lavenier, Thérèse Malliavin, Antonio Monari, Isabelle Nondier, Françoise Peyrin, Pierre Pouget, David Vallenet, Rufin Vanrullen, Stéphane Vezian, Aleksandra Walczak
2020 - -REPORT-
123 Capacity-Resolution Trade-Off in the Optimal Learning of Multiple Low-Dimensional Manifolds by Attractor Neural Networks
Aldo Battista, Rémi Monasson
2020 - Physical Review Letters
Aldo Battista, Rémi Monasson
2020 - Physical Review Letters
124 Inference of compressed Potts graphical models
Francesca Rizzato, Alice Coucke, Eleonora de Leonardis, J. P. P. Barton, Jérôme Tubiana, Remi Monasson, Simona Cocco
2020 - Physical Review E
Francesca Rizzato, Alice Coucke, Eleonora de Leonardis, J. P. P. Barton, Jérôme Tubiana, Remi Monasson, Simona Cocco
2020 - Physical Review E
125 From behavior to circuit modeling of light-seeking navigation in zebrafish larvae
Sophia Karpenko, Sebastien Wolf, Julie Lafaye, Guillaume Le Goc, Thomas Panier, Volker Bormuth, R. Candelier, Georges Debrégeas
2020 - eLife
Sophia Karpenko, Sebastien Wolf, Julie Lafaye, Guillaume Le Goc, Thomas Panier, Volker Bormuth, R. Candelier, Georges Debrégeas
2020 - eLife
126 Constraints and limitations on decoding positional information: the Bicoid case-study
Huy Tran, Walczak Aleksandra, Nathalie Dostatni
2020 -
Huy Tran, Walczak Aleksandra, Nathalie Dostatni
2020 -
127 Exploiting B Cell Receptor Analyses to Inform on HIV-1 Vaccination Strategies
Christoph Kreer, Henning Gruell, Thierry Mora, Aleksandra Walczak, Florian Klein
2020 - Vaccines
Christoph Kreer, Henning Gruell, Thierry Mora, Aleksandra Walczak, Florian Klein
2020 - Vaccines
128 Inferring the immune response from repertoire sequencing
Maximilian Puelma Touzel, Aleksandra M Walczak, Thierry Mora
2020 - PLoS Computational Biology
Maximilian Puelma Touzel, Aleksandra M Walczak, Thierry Mora
2020 - PLoS Computational Biology
129 Quantitative Immunology for Physicists
Grégoire Altan-Bonnet, Thierry Mora, Aleksandra M. Walczak
2020 - Physics Reports
Grégoire Altan-Bonnet, Thierry Mora, Aleksandra M. Walczak
2020 - Physics Reports
2019
130 Dissipation in Non-Steady State Regulatory Circuits
Paulina Szymańska-Rożek, Dario Villamaina, Jacek Miȩkisz, Aleksandra Walczak
2019 - Entropy
Paulina Szymańska-Rożek, Dario Villamaina, Jacek Miȩkisz, Aleksandra Walczak
2019 - Entropy
131 Can Grid Cell Ensembles Represent Multiple Spaces?
Davide Spalla, Alexis Dubreuil, Sophie Rosay, Remi Monasson, Alessandro Treves
2019 - Neural Computation
Davide Spalla, Alexis Dubreuil, Sophie Rosay, Remi Monasson, Alessandro Treves
2019 - Neural Computation
132 How many different clonotypes do immune repertoires contain?
Thierry Mora, Aleksandra Walczak
2019 - Current Opinion in Systems Biology
Thierry Mora, Aleksandra Walczak
2019 - Current Opinion in Systems Biology
133 Adaptive cluster expansion for Ising spin models
Simona Cocco, Giancarlo Croce, Francesco Zamponi
2019 - The European Physical Journal B: Condensed Matter and Complex Systems
Simona Cocco, Giancarlo Croce, Francesco Zamponi
2019 - The European Physical Journal B: Condensed Matter and Complex Systems
134 Physical Limit to Concentration Sensing in a Changing Environment
Thierry Mora, Ilya Nemenman
2019 - Physical Review Letters
Thierry Mora, Ilya Nemenman
2019 - Physical Review Letters
135 OLGA: fast computation of generation probabilities of B- and T-cell receptor amino acid sequences and motifs
Zachary Sethna, Yuval Elhanati, Curtis G Callan, Aleksandra M. Walczak, Thierry Mora
2019 - Bioinformatics
Zachary Sethna, Yuval Elhanati, Curtis G Callan, Aleksandra M. Walczak, Thierry Mora
2019 - Bioinformatics
136 Physique statistique et apprentissage machine : une méthode et trois exemples
Remi Monasson
2019 -
Remi Monasson
2019 -
137 Size and structure of the sequence space of repeat proteins
Jacopo Marchi, Ezequiel A Galpern, Rocío Espada, Diego U Ferreiro, Aleksandra M. Walczak, Thierry Mora
2019 - PLoS Computational Biology
Jacopo Marchi, Ezequiel A Galpern, Rocío Espada, Diego U Ferreiro, Aleksandra M. Walczak, Thierry Mora
2019 - PLoS Computational Biology
138 Learning Compositional Representations of Interacting Systems with Restricted Boltzmann Machines: Comparative Study of Lattice Proteins
Jérôme Tubiana, Simona Cocco, Remi Monasson
2019 - Neural Computation
Jérôme Tubiana, Simona Cocco, Remi Monasson
2019 - Neural Computation
139 How a well-adapting immune system remembers
Andreas Mayer, Vijay Balasubramanian, Aleksandra M. Walczak, Thierry Mora
2019 - Proceedings of the National Academy of Sciences of the United States of America
Andreas Mayer, Vijay Balasubramanian, Aleksandra M. Walczak, Thierry Mora
2019 - Proceedings of the National Academy of Sciences of the United States of America
140 Modeling the Correlated Activity of Neural Populations: A Review
Christophe Gardella, Olivier Marre, Thierry Mora
2019 - Neural Computation
Christophe Gardella, Olivier Marre, Thierry Mora
2019 - Neural Computation
141 Receptor crosstalk improves concentration sensing of multiple ligands
Martín Carballo-Pacheco, Jonathan Desponds, Tatyana Gavrilchenko, Andreas Mayer, Roshan Prizak, Gautam Reddy, Ilya Nemenman, Thierry Mora
2019 - Physical Review E
Martín Carballo-Pacheco, Jonathan Desponds, Tatyana Gavrilchenko, Andreas Mayer, Roshan Prizak, Gautam Reddy, Ilya Nemenman, Thierry Mora
2019 - Physical Review E
142 Genesis of the αβ T-cell receptor
Thomas Dupic, Quentin Marcou, Aleksandra M. Walczak, Thierry Mora
2019 - PLoS Computational Biology
Thomas Dupic, Quentin Marcou, Aleksandra M. Walczak, Thierry Mora
2019 - PLoS Computational Biology
143 Fierce Selection and Interference in B-Cell Repertoire Response to Chronic HIV-1
Armita Nourmohammad, Jakub Otwinowski, Marta Łuksza, Thierry Mora, Aleksandra M Walczak
2019 - Molecular Biology and Evolution
Armita Nourmohammad, Jakub Otwinowski, Marta Łuksza, Thierry Mora, Aleksandra M Walczak
2019 - Molecular Biology and Evolution
144 Three-point functions in the fully packed loop model on the honeycomb lattice
Thomas Dupic, Benoît Estienne, Yacine Ikhlef
2019 - Journal of Physics A: Mathematical and Theoretical
Thomas Dupic, Benoît Estienne, Yacine Ikhlef
2019 - Journal of Physics A: Mathematical and Theoretical
145 The imaginary Toda field theory
Thomas Dupic, Benoît Estienne, Yacine Ikhlef
2019 - Journal of Physics A: Mathematical and Theoretical
Thomas Dupic, Benoît Estienne, Yacine Ikhlef
2019 - Journal of Physics A: Mathematical and Theoretical
146 Learning protein constitutive motifs from sequence data
Jérôme Tubiana, Simona Cocco, Remi Monasson
2019 - eLife
Jérôme Tubiana, Simona Cocco, Remi Monasson
2019 - eLife
147 Multi-Lineage Evolution in Viral Populations Driven by Host Immune Systems
Jacopo Marchi, Michael Lässig, Thierry Mora, Aleksandra M. Walczak
2019 - Pathogens
Jacopo Marchi, Michael Lässig, Thierry Mora, Aleksandra M. Walczak
2019 - Pathogens
148 Adaptation of olfactory receptor abundances for efficient coding
Tiberiu Teşileanu, Simona Cocco, Remi Monasson, Vijay Balasubramanian
2019 - eLife
Tiberiu Teşileanu, Simona Cocco, Remi Monasson, Vijay Balasubramanian
2019 - eLife
149 Detecting T cell receptors involved in immune responses from single repertoire snapshots
Mikhail V Pogorelyy, Anastasia Minervina, Mikhail Shugay, Dmitriy Chudakov, Yuri Lebedev, Thierry Mora, Aleksandra M Walczak
2019 - PLoS Biology
Mikhail V Pogorelyy, Anastasia Minervina, Mikhail Shugay, Dmitriy Chudakov, Yuri Lebedev, Thierry Mora, Aleksandra M Walczak
2019 - PLoS Biology
150 Epistasis in a Fitness Landscape Defined by Antibody-Antigen Binding Free Energy
Rhys Adams, Justin Kinney, Aleksandra M Walczak, Thierry Mora
2019 - Cell Systems
Rhys Adams, Justin Kinney, Aleksandra M Walczak, Thierry Mora
2019 - Cell Systems
Documents récupérés de l'archive ouverte HAL 