Theoretical neuroscience and biophysics

Publications

Theoretical neuroscience and biophysics

51 Fluid mechanics of free subduction on a sphere. Part 1. The axisymmetric case
Alexander Chamolly, Neil M. Ribe
2021 - Journal of Fluid Mechanics

52 Modeling the mechanics of growing epithelia with a bilayer plate theory
Joseph Ackermann, Paul-Qiuyang Qu, Loïc Le Goff, Martine Ben Amar
2021 - The European Physical Journal Plus

53 Machine learning and computational modeling approaches towards detection of pathological activity markers in the cortex
Ivan Lazarevich
2021 - -THESE-

54 Geometry of Gene Regulatory Dynamics
David A Rand, Archishman Raju, Meritxell Sáez, Francis Corson, Eric D Siggia
2021 - Proceedings of the National Academy of Sciences of the United States of America

55 Origin of gradients in lipid density and surface tension between connected lipid droplet and bilayer
Abdou Rachid Thiam, Aymeric Chorlay, Lionel Forêt
2021 - Biophysical Journal

56 Human Inference in Changing Environments with Temporal Structure
Arthur Prat-Carrabin, Robert Wilson, Jonathan Cohen, Rava Azeredo da Silveira
2021 - Psychological Review

57 Multi-cellular aggregates, a model for living matter
Joseph Ackermann, Martine Ben Amar, J.-F. Joanny
2021 - Physics Reports

58 The geometry of information coding in correlated neural populations
Rava Azeredo da Silveira, Fred Rieke
2021 - Annual Review of Neuroscience

59 Biases and Variability from Costly Bayesian Inference
Arthur Prat-Carrabin, Florent Meyniel, Misha Tsodyks, Rava Azeredo da Silveira
2021 - Entropy

60 A suite of neurophotonic tools to underpin the contribution of internal brain states in fMRI
Philipp Mächler, Thomas Broggini, Celine Mateo, Martin Thunemann, Natalie Fomin-Thunemann, Patrick Doran, Ikbal Sencan, Kivilcim Kilic, Michèle Desjardins, Hana Uhlirova, Mohammad Yaseen, David Boas, Andreas Linninger, Massimo Vergassola, Xin Yu, Laura Lewis, Jonathan Polimeni, Bruce Rosen, Sava Sakadžić, Richard Buxton, Martin Lauritzen, David Kleinfeld, Anna Devor
2021 - Current Opinion in Biomedical Engineering

61 Reciprocal stabilization of glycine receptors and gephyrin scaffold proteins at inhibitory synapses
Thomas Chapdelaine, Vincent Hakim, Antoine Triller, Jonas Ranft, Christian G Specht
2021 - Biophysical Journal

62 Fat inclusions strongly alter membrane mechanics
Alexandre Santinho, Aymeric Chorlay, Lionel Foret, Abdou Rachid Thiam
2021 - Biophysical Journal

63 From growing bubbles and dendrites to biological forms
Vincent Hakim
2020 - Comptes Rendus. Mécanique

64 Synchronization, stochasticity and phase waves in neuronal networks with spatially-structured connectivity
Anirudh Kulkarni, Jonas Ranft, Vincent Hakim
2020 - Frontiers in Computational Neuroscience

65 Decision-making at a T-junction by gradient-sensing microscopic agents
Tanvi Gandhi, Jinzi Mac Huang, Antoine Aubret, Yaocheng Li, Sophie Ramananarivo, Massimo Vergassola, Jérémie Palacci
2020 - Physical Review Fluids

66 Tissue-wide coordination of epithelium-to-neural stem cell transition in the Drosophila optic lobe requires Neuralized
Chloé Shard, Juan Luna-Escalante, François Schweisguth
2020 - Journal of Cell Biology

67 Antagonistic odor interactions in olfactory sensory neurons are widespread in freely breathing mice
Joseph D Zak, Gautam Reddy, Massimo Vergassola, Venkatesh N Murthy
2020 - Nature Communications

68 From neural coding to decision-making
Kevin Berlemont
2020 - -THESE-

69 Detection of Topological Materials with Machine Learning
Nikolas Claussen, B. Andrei Bernevig, Nicolas Regnault
2020 - Physical Review B

70 Cholinergic switch between two types of slow waves in cerebral cortex
Trang-Anh E. Nghiem, Núria Tort-Colet, Tomasz Gorski, Ulisse Ferrari, Shayan Moghimyfiroozabad, Jennifer S. Goldman, Bartosz Telenczuk, Cristiano Capone, Thierry Bal, Matteo Di Volo, Alain Destexhe
2020 - Cerebral Cortex

71 Nonlinear neural network dynamics accounts for human confidence in a sequence of perceptual decisions
Kevin Berlemont, Jean-Remy Martin, Jérôme Sackur, Jean-Pierre Nadal
2020 - Scientific Reports

72 Physical and Mathematical Modeling in Oncology: Examples
Martine Ben Amar
2020 -

73 Scaling laws and snap-through events in indentation of perforated membranes
Fei Jia, Martine Ben Amar
2020 - Journal of the Mechanics and Physics of Solids

74 A tensile ring drives tissue flows to shape the gastrulating amniote embryo
Mehdi Saadaoui, Didier Rocancourt, Julian Roussel, Francis Corson, Jerome Gros
2020 - Science

75 Tribute to an exemplary man: Yves Couder
Martine Ben Amar, Laurent Limat, Olivier Pouliquen, Emmanuel Villermaux
2020 - Comptes Rendus. Mécanique

76 Tip growth in morpho-elasticity
Martine Ben Amar, Julien Dervaux
2020 - Comptes Rendus. Mécanique

77 Lifetime of a structure evolving by cluster aggregation and particle loss, and application to postsynaptic scaffold domains
Vincent Hakim, Jonas Ranft
2020 - Physical Review E

78 Modeling morphogenesis on epithelial tissues : from forces to geometry and back
Diego Contreras
2019 - -THESE-

79 Bridging single neuron dynamics to global brain states
Jennifer S Goldman, Núria Tort-Colet, Matteo Di Volo, Eduarda Susin, Jules Bouté, Mélissa Dali, Mallory Carlu, Trang-Anh Nghiem, Tomasz Gorski, Alain Destexhe
2019 - Frontiers in Systems Neuroscience

80 Regulation of Notch output dynamics via specific E(spl)-HLH factors during bristle patterning in Drosophila
Lydie Couturier, Khalil Mazouni, Francis Corson, François Schweisguth
2019 - Nature Communications

81 Chemotaxis as a navigation strategy to boost range expansion
Jonas Cremer, Tomoya Honda, Ying Tang, Jerome Wong-Ng, Massimo Vergassola, Terence Hwa
2019 - Nature

82 Progressive recruitment of distal MEC-4 channels determines touch response strength in C. elegans
Samata Katta, Alessandro Sanzeni, Alakananda Das, Massimo Vergassola, Miriam Goodman
2019 - Journal of General Physiology

83 Growth and remodelling of living tissues: perspectives, challenges and opportunities
Davide Ambrosi, Martine Ben Amar, Christian Cyron, Antonio Desimone, Alain Goriely, Jay Humphrey, Ellen Kuhl
2019 - Journal of the Royal Society Interface

84 Self-Organization in Pattern Formation
François Schweisguth, Francis Corson
2019 - Developmental Cell

85 From statistical physics to social sciences: Foreword
Jean-Philippe Bouchaud, Jean-Pierre Nadal
2019 - Comptes Rendus. Physique

86 Noisy Memory and Over-Reaction to News
Rava Azeredo da Silveira, Michael Woodford
2019 - American Economic Review Papers and Proceedings

87 Self-Organized Nuclear Positioning Synchronizes the Cell Cycle in Drosophila Embryos
Victoria Deneke, Alberto Puliafito, Daniel Krueger, Avaneesh Narla, Alessandro de Simone, Luca Primo, Massimo Vergassola, Stefano de Renzis, Stefano Di Talia
2019 - Cell

88 Microscopic study of the Halperin–Laughlin interface through matrix product states
Valentin Crépel, N. Claussen, Nicolas Regnault, B. Estienne
2019 - Nature Communications

89 Model states for a class of chiral topological order interfaces
Valentin Crépel, N. Claussen, B. Estienne, Nicolas Regnault
2019 - Nature Communications

90 Residential income segregation: A behavioral model of the housing market
Marco Pangallo, Jean-Pierre Nadal, Annick Vignes
2019 - Journal of Economic Behavior and Organization

91 Functional Diversity in the Retina Improves the Population Code
Michael Berry Ii, Felix Lebois, Avi Ziskind, Rava Azeredo da Silveira
2019 - Neural Computation

92 Perceptual decision making: Biases in post-error reaction times explained by attractor network dynamics
Kevin Berlemont, Jean-Pierre Nadal
2019 - Journal of Neuroscience

93 Glutamate spillover in C. elegans triggers repetitive behavior through presynaptic activation of MGL-2/mGluR5
Menachem Katz, Francis Corson, Wolfgang Keil, Anupriya Singhal, Andrea Bae, Yun Lu, Yupu Liang, Shai Shaham
2019 - Nature Communications

94 SNARE Machinery is optimized for ultra-fast fusion
Fabio Manca, Frédéric Pincet, Lev Truskinovsky, James E Rothman, Lionel Foret, Matthieu Caruel
2019 - Proceedings of the National Academy of Sciences of the United States of America

95 Clonal pattern dynamics in tumor: the concept of cancer stem cells
Fabrizio Olmeda, Martine Ben Amar
2019 - Scientific Reports

96 Physics of growing biological tissues: the complex cross-talk between cell activity, growth and resistance
Martine Ben Amar, Pierre Nassoy, Loïc Le Goff
2019 - Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences

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96

Publications

7

Years

Biophysique