Multiscale physics of living systems

Publications

Multiscale physics of living systems

1 Fluorescence to measure light intensity
Aliénor Lahlou, Hessam Sepasi Tehrani, Ian Coghill, Yuriy Shpinov, Mrinal Mandal, Marie-Aude Plamont, Isabelle Aujard, Yuxi Niu, Ladislav Nedbal, Dusan Lazár, Pierre Mahou, Willy Supatto, Emmanuel Beaurepaire, Isabelle Eisenmann, Nicolas Desprat, Vincent Croquette, Raphaël Jeanneret, Thomas Le Saux, Ludovic Jullien
Nature Methods

2 A genome-wide screen reveals new regulators of the 2-cell-like cell state
Nikhil Gupta, Lounis Yakhou, Julien Richard Albert, Anaelle Azogui, Laure Ferry, Olivier Kirsh, Fumihito Miura, Sarah Battault, Kosuke Yamaguchi, Marthe Laisné, Cécilia Domrane, Frédéric Bonhomme, Arpita Sarkar, Marine Delagrange, Bertrand Ducos, Gael Cristofari, Takashi Ito, Maxim Greenberg, Pierre-Antoine Defossez
Nature Structural and Molecular Biology

3 Natural antisense transcription of presenilin in sea urchin reveals a possible role for natural antisense transcription in the general control of gene expression during development
Odile Bronchain, Bertrand Ducos, Harald Putzer, Marine Delagrange, Soumaya Laalami, Laetitia Philippe-Caraty, Krystel Saroul, Brigitte Ciapa
Journal of Cell Science

4 Extra kinetic dimensions for label discrimination
Raja Chouket, Agnès Pellissier-Tanon, Aliénor Lahlou, Ruikang Zhang, Diana Kim, Marie-Aude Plamont, Mingshu Zhang, Xi Zhang, Pingyong Xu, Nicolas Desprat, Dominique Bourgeois, Agathe Espagne, Annie Lemarchand, Thomas Le Saux, Ludovic Jullien
Nature Communications

5 Displacement and dissociation of oligonucleotides during DNA hairpin closure under strain
Fangyuan Ding, Simona Cocco, Saurabh Raj, Maria Manosas, Thao Thi Thu Nguyen, Michelle M Spiering, David Bensimon, Jean-François Allemand, V. Croquette
Nucleic Acids Research

6 Strand switching mechanism of Pif1 helicase induced by its collision with a G-quadruplex embedded in dsDNA
Jessica Valle-Orero, Martin Rieu, Phong Lan Thao Tran, Alexandra Joubert, Saurabh Raj, Jean-François Allemand, Vincent Croquette, Jean-Baptiste Boulé
Nucleic Acids Research

7 The success of the bloom-forming cyanobacteria Planktothrix: Genotypes variability supports variable responses to light and temperature stress
Sandra Kim Tiam, Katia Comte, Caroline Dalle, Marine Delagrange, Chakib Djediat, Bertrand Ducos, Charlotte Duval, Kathleen Feilke, Sahima Hamlaoui, Séverine Le Manach, Pierre Setif, Claude Yéprémian, B Marie, Diana Kirilovsky, Muriel Gugger, Cécile Bernard
Harmful Algae

8 Critical slowing down may account for the robustness of development
Weiting Zhang, Pierluigi Scerbo, Bertrand Ducos, David Bensimon
Proceedings of the National Academy of Sciences of the United States of America

9 Nucleosome positioning on large tandem DNA repeats of the ’601’ sequence engineered in Saccharomyces cerevisiae
Astrid Lancrey, Alexandra Joubert, Evelyne Duvernois-Berthet, Etienne Routhier, Saurabh Raj, Agnès Thierry, Marta Sigarteu, Loic Ponger, Vincent Croquette, Julien Mozziconacci, Jean-Baptiste Boulé
Journal of Molecular Biology

10 Fgf8 dynamics and critical slowing down may account for the temperature independence of somitogenesis
Weiting Zhang, Pierluigi Scerbo, Marine Delagrange, Virginie Candat, Vanessa Mayr, Sophie Vriz, Martin Distel, Bertrand Ducos, David Bensimon
Communications Biology

11 Resonances at Fundamental and Harmonic Frequencies for Selective Imaging of Sine‐Wave Illuminated Reversibly Photoactivatable Labels
Agnès Pellissier-Tanon, Raja Chouket, Ruikang Zhang, Aliénor Lahlou, Agathe Espagne, Annie Lemarchand, Vincent Croquette, Ludovic Jullien, Thomas Le Saux
ChemPhysChem

12 HCV Core protein needs triacylglycerols to fold onto the endoplasmic reticulum membrane
Dalila Ajjaji, Kalthoum Ben M’barek, Bertrand Boson, Mohyeddine Omrane, Ama Gassama‐diagne, Magali Blaud, François Penin, Elise Diaz, Bertrand Ducos, François-Loïc Cosset, Abdou Rachid Thiam
Traffic

13 Novel approaches to study helicases using magnetic tweezers
Nadia Ruiz-Gutierrez, Martin Rieu, Jimmy Ouellet, Jean-François Allemand, Vincent Croquette, Hervé Le Hir

14 Confinement-induced accumulation and de-mixing of microscopic active-passive mixtures
Stephen Williams, Raphaël Jeanneret, Idan Tuval, Marco Polin
Nature Communications

15 Detection of genetic variation and base modifications at base-pair resolution on both DNA and RNA
Zhen Wang, Jérôme Maluenda, Laurène Giraut, Thibault Vieille, Andréas Lefevre, David Salthouse, Gaël Radou, Rémi Moulinas, Sandra Astete, Pol d'Avezac, Geoff Smith, Charles André, Jean-François Allemand, David Bensimon, Vincent Croquette, Jimmy Ouellet, Gordon Hamilton
Communications Biology

16 Folding and persistence times of intramolecular G-quadruplexes transiently embedded in a DNA duplex
Phong Lan Thao Tran, Martin Rieu, Samar Hodeib, Alexandra Joubert, Jimmy Ouellet, Patrizia Alberti, Anthony Bugaut, Jean-François Allemand, Jean-Baptiste Boulé, Vincent Croquette
Nucleic Acids Research

17 Parallel, linear, and subnanometric 3D tracking of microparticles with Stereo Darkfield Interferometry
Martin Rieu, Thibault Vieille, Gaël Radou, Raphael Jeanneret, Nadia Ruiz-Gutierrez, Bertrand Ducos, Jean-François Allemand, Vincent Croquette
Science Advances

18 Single-molecule kinetic locking allows fluorescence-free quantification of protein/nucleic-acid binding
Martin Rieu, Jessica Valle-Orero, Bertrand Ducos, Jean-François Allemand, Vincent Croquette
Communications Biology

19 Fluorescent secreted bacterial effectors reveal active intravacuolar proliferation of Listeria monocytogenes in epithelial cells
Caroline Peron Cane, José Carlos Fernandez, Julien Leblanc, Laure Wingertsmann, Arnaud Gautier, Nicolas Desprat, Alice Lebreton
PLoS Pathogens

20 Visualizing the dynamics of exported bacterial proteins with the chemogenetic fluorescent reporter FAST
Yankel Chekli, Caroline Peron-Cane, Dario Dell’arciprete, Jean-François Allemand, Chenge Li, Jean-Marc Ghigo, Arnaud Gautier, Alice Lebreton, Nicolas Desprat, Christophe Beloin
Scientific Reports

21 Correction to “Dynamic Contrast for Plant Phenotyping”
Zsolt Kelemen, Ruikang Zhang, Lionel Gissot, Raja Chouket, Yannick Bellec, Vincent Croquette, Ludovic Jullien, Jean-Denis Faure, Thomas Le Saux
ACS Omega

22 Dynamic Contrast for Plant Phenotyping
Zsolt Kelemen, Ruikang Zhang, Lionel Gissot, Raja Chouket, Yannick Bellec, Vincent Croquette, Ludovic Jullien, Jean-Denis Faure, Thomas Le Saux
ACS Omega

23 Method for the determination of preferential orientation of marine particles from laser diffraction measurements
J. S. Font-Munoz, Raphael Jeanneret, Idan Tuval, Gotzon Basterretxea
Optics Express

24 Reduced central and peripheral inflammatory responses and increased mitochondrial activity contribute to diet-induced obesity resistance in WSB/EiJ mice
Jérémy Terrien, Isabelle Seugnet, Bolaji Seffou, Maria Herrero, James Bowers, Lamis Chamas, Stéphanie Decherf, Evelyne Duvernois-Berthet, Chakib Djediat, Bertrand Ducos, Barbara Demeneix, Marie-Stéphanie Clerget-Froidevaux
Scientific Reports

25 Tunable and switchable soft adsorption of polymer-coated microparticles on a flat substrate
Giuseppe Boniello, Christophe Tribet, Emmanuelle Marie, Vincent Croquette, Dražen Zanchi
Colloids and Surfaces A: Physicochemical and Engineering Aspects

26 Parallelized DNA tethered bead measurements to scrutinize DNA mechanical structure
Jean-François Allemand, Catherine Tardin, Laurence Salomé
Methods

27 A Model of Somitogenesis
Weiting Zhang, Vanessa Mayr, Bertrand Ducos, Martin Distel, David Bensimon
Journal of Statistical Physics

28 Mechanistic characterization of the DEAD-box RNA helicase Ded1 from yeast as revealed by a novel technique using single-molecule magnetic tweezers
Saurabh Raj, Debjani Bagchi, Jessica Valle Orero, Josette Banroques, N kyle Tanner, Vincent Croquette
Nucleic Acids Research

29 PICH and TOP3A cooperate to induce positive DNA supercoiling
Anna Bizard, Jean-François Allemand, Tue Hassenkam, Manikandan Paramasivam, Kata Sarlós, Manika Indrajit Singh, Ian Hickson
Nature Structural and Molecular Biology

30 Longitudinal Analyses of Blood Transcriptome During Conversion to Psychosis
Boris Chaumette, Oussama Kebir, Juliette Pouch, Bertrand Ducos, Fekrije Selimi, Raphael Gaillard, Marie-Odile Krebs, I. Amado, C. Gaillard, M. Plaze, E. Magaud, M. Kazes, C. Mam-Lam-Fook, C. Daban, O. Gay, J. Bourgin, G. Martinez, M-N Vacheron, A. Viala, X. Laqueille, Alain Dervaux, F. Petitjean, O. Canceil, B. Garnier, M. Fishmann-Mathis, B. Gal, J. P. Benoit, M. R. Moro
Schizophrenia Bulletin

31 Optical control of protein activity and gene expression by photoactivation of caged cyclofen
Fatima Hamouri, Weiting Zhang, Isabelle Aujard, Thomas Le Saux, Bertrand Ducos, Sophie Vriz, Ludovic Jullien, David Bensimon

31

Publications

5

Years

Biophysique